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mmm2015  (MathWorks Inc)


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    Structured Review

    MathWorks Inc mmm2015
    Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in <t>MMM2015</t> was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002
    Mmm2015, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mmm2015/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    mmm2015 - by Bioz Stars, 2026-03
    90/100 stars

    Images

    1) Product Images from "Exploring conformational equilibria of a heterodimeric ABC transporter"

    Article Title: Exploring conformational equilibria of a heterodimeric ABC transporter

    Journal: eLife

    doi: 10.7554/eLife.20236

    Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in MMM2015 was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002
    Figure Legend Snippet: Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in MMM2015 was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002

    Techniques Used: Labeling, Comparison

    Simulations of the distance distribution probability for the six spin-labeled pairs in the IF (cyan) and OF (magenta) states performed with MMM2015 with the rotamer library at ambient temperature (dotted lines as in ) and with the rotamer library of MMM2013 simulated at 175 K (dashed lines). The experimental distance distributions on nucleotide-free (apo, black solid line in upper plots) and ATP-Vi-Mg (black, solid line in lower plots) states are taken from . Transparent cyan and magenta rectangles outline the range of experimental distances characteristic of the IF and OF conformations, respectively. DOI: http://dx.doi.org/10.7554/eLife.20236.003
    Figure Legend Snippet: Simulations of the distance distribution probability for the six spin-labeled pairs in the IF (cyan) and OF (magenta) states performed with MMM2015 with the rotamer library at ambient temperature (dotted lines as in ) and with the rotamer library of MMM2013 simulated at 175 K (dashed lines). The experimental distance distributions on nucleotide-free (apo, black solid line in upper plots) and ATP-Vi-Mg (black, solid line in lower plots) states are taken from . Transparent cyan and magenta rectangles outline the range of experimental distances characteristic of the IF and OF conformations, respectively. DOI: http://dx.doi.org/10.7554/eLife.20236.003

    Techniques Used: Labeling



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    mmm2015  (MathWorks Inc)
    90
    MathWorks Inc mmm2015
    Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in <t>MMM2015</t> was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002
    Mmm2015, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mmm2015/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    mmm2015 - by Bioz Stars, 2026-03
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in MMM2015 was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002

    Journal: eLife

    Article Title: Exploring conformational equilibria of a heterodimeric ABC transporter

    doi: 10.7554/eLife.20236

    Figure Lengend Snippet: Schematic of spin-labeled sites in the extracellular, intracellular and NBD regions of TM287/288 in ( A ) the inward-facing apo crystal structure (PDB: 4Q4H) and in ( B ) the outward-facing homology model based on the Sav1866 crystal structure (PDB: 2HYD). TM287 is colored in cyan and TM288 in pink. ( C – E ) Simulations of the distance distribution probabilities for the six spin-labeled double mutants in the IF (cyan) and OF (magenta) states represented in panels A and B. The ambient temperature MTSL rotamer library in MMM2015 was used. Comparison with the experimental data and with a previous version of the MTSL library are presented in . DOI: http://dx.doi.org/10.7554/eLife.20236.002

    Article Snippet: Optimal spin-labeled pair positions were selected using the available PDB data and the rotamer library approach for the MTSL ([1-Oxyl-2,2,5,5-tetramethyl-∆3-pyrroline-3-methyl] Methanethiosulfonate) spin-labeled side chains available in the Matlab package MMM2015 ( ).

    Techniques: Labeling, Comparison

    Simulations of the distance distribution probability for the six spin-labeled pairs in the IF (cyan) and OF (magenta) states performed with MMM2015 with the rotamer library at ambient temperature (dotted lines as in ) and with the rotamer library of MMM2013 simulated at 175 K (dashed lines). The experimental distance distributions on nucleotide-free (apo, black solid line in upper plots) and ATP-Vi-Mg (black, solid line in lower plots) states are taken from . Transparent cyan and magenta rectangles outline the range of experimental distances characteristic of the IF and OF conformations, respectively. DOI: http://dx.doi.org/10.7554/eLife.20236.003

    Journal: eLife

    Article Title: Exploring conformational equilibria of a heterodimeric ABC transporter

    doi: 10.7554/eLife.20236

    Figure Lengend Snippet: Simulations of the distance distribution probability for the six spin-labeled pairs in the IF (cyan) and OF (magenta) states performed with MMM2015 with the rotamer library at ambient temperature (dotted lines as in ) and with the rotamer library of MMM2013 simulated at 175 K (dashed lines). The experimental distance distributions on nucleotide-free (apo, black solid line in upper plots) and ATP-Vi-Mg (black, solid line in lower plots) states are taken from . Transparent cyan and magenta rectangles outline the range of experimental distances characteristic of the IF and OF conformations, respectively. DOI: http://dx.doi.org/10.7554/eLife.20236.003

    Article Snippet: Optimal spin-labeled pair positions were selected using the available PDB data and the rotamer library approach for the MTSL ([1-Oxyl-2,2,5,5-tetramethyl-∆3-pyrroline-3-methyl] Methanethiosulfonate) spin-labeled side chains available in the Matlab package MMM2015 ( ).

    Techniques: Labeling